PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0132s0310.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 244aa    MW: 27646.6 Da    PI: 5.6614
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0132s0310.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19e-18110159355
                     AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             y+GVr ++ +g+++AeIrd    + k+ r++lg+f+tae Aa a+++a+  ++g
  SapurV1A.0132s0310.1.p 110 YRGVRKRP-WGKYAAEIRDsT--R-KHVRVWLGTFDTAEAAALAYDQAAFTIRG 159
                             9*******.**********32..2.36**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.0E-37109173IPR001471AP2/ERF domain
PROSITE profilePS5103223.288109167IPR001471AP2/ERF domain
CDDcd000182.08E-20110169No hitNo description
SuperFamilySSF541714.58E-22110168IPR016177DNA-binding domain
PRINTSPR003678.7E-11110121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-30110168IPR001471AP2/ERF domain
PfamPF008472.5E-13110159IPR001471AP2/ERF domain
PRINTSPR003678.7E-11133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MKRNTHSNIE TNPLDPSMDS SYFHYQNSLF SPESSSSFNS RDSFSCNIQN FYSQPLPLSE  60
NHDSQEMFLS EVPNEVPVNS LHTSSSTDTT CDEASSRASY QDEPPQQIAY RGVRKRPWGK  120
YAAEIRDSTR KHVRVWLGTF DTAEAAALAY DQAAFTIRGS MAVLNFPVQK VYESLQQMSY  180
GFQEGKSPIV AMKERHSMNR KAESRKKKER GRRTEMENVV VLEDLGADYL EDLLTISESA  240
SPW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-25110169362ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325325.11e-123hypothetical protein POPTR_0019s03170g
SwissprotQ8LDC81e-59ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLB9IP811e-123B9IP81_POPTR; Uncharacterized protein
STRINGPOPTR_0019s03170.11e-123(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-51ethylene response factor 1